News

Updates and additions since 2023

  • Allium cepa (update - Onion Genome Sequencing Project)
  • Bacillus velezensis JS25R (new species - ncbi nih)
  • Colletotrichum gloeosporioides (new species)
  • Cucurbita pepo (new species)
  • Fragaria x ananassa (new species - Camarosa Genome Assembly v1.0)
  • Fragaria x ananassa (new species - Dryad)
  • Helianthus annuus (new species - phytozome 13)
  • Hordeum vulgare (update - GrainGenes)
Updates and additions since 2022
  • Citrullus lanatus (update - Curcurbitagenomics)
  • Citrullus lanatus (update - EnsemblGenomes)
  • Hordeum vulgare cv. Morex genome (update - phytozome)
  • Marchantia polymorpha (new species - JGI v3.1)
  • Marchantia polymorpha (new species - MpTak_v6.1)
  • Mesocricetus auratus (new species - EnsemblGenomes)
  • Oryza sativa ssp japonica cv. Kitaake (update - phytozome)
  • Oryza sativa ssp japonica cv. Nipponbare (update - phytozome)
  • Rosa chinensis (update - rosaceae.org)
  • Sesamum indicum (update - ncbi)
  • Solanum lycopersicum (update - ITAG4.1)
  • Vigna mungo (new species - Vigna genome server)
  • Zea mays (update - ENSEMBL Plants Zm-B73-REFERENCE-NAM-5.0)
Updates and additions since 2021
  • Aspergillus nidulans (update - EnsemblGenomes)
  • Daucus carota (upate - NCBI)
  • Eragrostis tef (new species - EnsemblGenomes)
  • Fagopyrum tataricum (new species - mbkbase)
  • SARS-CoV-2 (new species - EnsemblGenomes)
  • Verticillium dahliae JR2 (new species - EnsemblGenomes)
Updates and additions since 2018
  • AdenoAssociatedVirus_2 (new species - NCBI)
  • Beauveria bassiana ARSEF 2860 (new species - RefSeq (2012))
  • Cajanus cajan (new species - RefSeq)
  • Chlamydomonas reinhardtii (update - Phytozome 12.0)
  • Daucus carota (new species - Phytozome 12.0)
  • HHV-5 (update - NCBI EF99921.1 (TB40/E))
  • Homo sapiens (update - RefSeq GRCh38.p13)
  • HumanAdenovirus_2 (new species - NCBI)
  • HumanAdenovirus_5 (new species - NCBI)
  • Lagenaria siceraria (new species - CuGenDB)
  • Medicago sativa (new species - figshare (2020))
  • Mus musculus (update - Ensemble release 100)
  • Mus musculus (update - NCBI Annotation Release 108)
  • Punica granatum (new species - RefSeq)
  • Rattus norvegicus (update - RefSeq Rnor_6.0)
  • Salvelinus alpinus (new species - RefSeq)
  • Tectona grandis (new species - https://biit.cs.ut.ee/supplementary/WGSteak/)
  • Triticum aestivum (update - EnsemblGenomes)
  • Vaccinium corymbosum (update - GDV - Draper)
  • Vigna radiata (new species - RefSeq)
  • Xylophilus ampelinus (new species - NCBI)
  • Ziziphus jujuba (new species - RefSeq)
Updates and additions since 2016
  • Anthracocystis flocculosa (Pseudozyma flocculosa) (new species)
  • Blumeria graminis (new species)
  • Bombus terrestris (new RefSeq data)
  • Chinchilla lanigera (new species)
  • Danio rerio (new RefSeq build)
  • Glycine max (Phytozome 12 update)
  • Homo sapiens (ENSEMBL 77 and ENSEMBL 91)
  • Laccaria bicolor (new species)
  • Manihot esculenta (new species)
  • Microbotryum lychnidis-dioicae (new species)
  • Populus tremula (new species)
  • Populus tremuloides (new species)
  • Populus trichocarpa (NCBI update and Phytozome 12 update)
  • Pseudomonas fluorescens (new species)
  • Salix purpurea (new species)
  • Sinorhizobium meliloti 1021 (new species)
  • Solanum lycopersicum (new ITAG version)
  • Zika Virus (new species)
Jul 5th 2011
Major database update: 400 new annotations added or updated from Ensembl, EnsemblGenomes, Phytozome and NCBI RefSeq.

Dec 8th 2011
The Mt3.5 v3 and v4 annotations for Medicago truncatula were added.

May 10th 2011
The ITAG annotations (release 1, 2 and 2.3) for tomato (Solanum lycopersicum) were added.

Feb 3rd 2011
The new JGI Phytozome 6.0 annotations for Eucalyptus grandis, Citrus clementina and Citrus senensis were added.

Dec 3rd 2010
We've now included all JGI Phytozome 6.0 annotations (22 plant species) and updated the UniGene annotations (130 species).

Nov 25th 2010
New and updated annotations for A. thaliana, C. reinhardtii and maize. [more...]

Jan 28th 2010
Problems with specificity of primers designed between the 12th and 28th Jan 2010 were identified and fixed. [more...]

Dec 30th 2009
The JGI-based Bradi_1.0 annotation for Brachypodium distachyon was added to the database.

Jul 2nd 2009
The TAIR release 9 annotation for Arabidopsis thaliana was added to the database.

May 14th 2009
New feature added: Avoidance of SNPs in primer design. [more...]

May 11th 2009
FlyBase release 5.17 sequence annotation added for Drosophila melanogaster.

Apr 30th 2009
RefSeq sequences for human, mouse, rat, cow and zebrafish updated; also splice variant annotation added.

Mar 2nd 2009
Hybridization probe design is now possible. [more...]

Feb 27th 2009
The rice annotation "MSU release 6" was added to the database.

Feb 23th 2009
It is now possible to perform full genome primer testing for selected annotations. [more...]

Feb 17th 2009
The tomato annotation "SGN Tomato 200607" was added to the database.


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